Extract the raw reads for alignment or variant calling: fasterq-dump --split-files --outdir ./raw_data accessions.txt
Use the SRA Toolkit to fetch the data: prefetch --option-file accessions.txt SRR5273-653_688.csv
Metadata linking the sequences to specific BioProjects or BioSamples. 🛠️ Quick Start: Using this CSV Extract the raw reads for alignment or variant
Information on library strategy (e.g., RNA-Seq, WGS), layout (Single vs. Paired-end), and platform (e.g., Illumina). layout (Single vs. Paired-end)
This CSV file contains the exported metadata for SRA accessions . These records are part of the public Sequence Read Archive (SRA) , which stores raw high-throughput sequencing data. 📂 File Contents
The run table typically includes critical fields for your bioinformatics pipeline:
Use a simple command to pull the SRR IDs for bulk downloading: cut -f 1 -d ',' SRR5273-653_688.csv > accessions.txt