In , the story diverges from the original anime during the First Naturals Election. Unlike the anime's focus on Ryuko Matoi, this "IF" scenario primarily follows Satsuki Kiryuin as the protagonist in an alternate timeline overseen by the anime's original writer, Kazuki Nakashima. The Alternate Tale: Satsuki’s Path

: Satsuki must face her mother, Ragyo Kiryuin , much earlier and under different circumstances. The game introduces original forms and power-ups, such as the "Junketsu Shinzui" form for Satsuki, which represents her ultimate synchronization with her Kamui.

: The vagrant schoolgirl with half of a giant Scissor Blade, whose search for her father's killer takes a sharp turn in this timeline.